Cluster set at subtree whose root is Musa acuminata subsp. acuminata (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
00111358358 1.000Musa acuminata subsp. zebrina chloroplast DNA, tRNA-Leu, trnL-F intergenic spacer region, tRNA-Phe, partial and complete sequence.
11111249249 1.000Musa acuminata subsp. zebrina MSAP-RGA gene, partial cds.
22161544544 1.000Musa acuminata subsp. zebrina endogenous virus badnavirus clone Zeb33 nonfunctional ORFIII-like polyprotein gene, partial sequence.
33111777777 1.000Musa acuminata subsp. zebrina atpB-rbcL intergenic spacer, partial sequence; chloroplast.
44111662662 1.000Musa acuminata subsp. zebrina 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence; chloroplast.
55111820820 1.000Musa acuminata subsp. zebrina ribosomal protein S16 (rps16) gene, intron; chloroplast.
66121791808 0.989Musa acuminata subsp. zebrina tRNA-Leu (trnL(UAA)) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF(GAA)) gene, partial sequence; chloroplast.
7711112511251 1.000Musa acuminata subsp. zebrina bio-material CIRAD:Guadeloupe NEU0029 trnK gene, partial sequence; and maturase K (matK) gene, partial cds; chloroplast.
88111163163 1.000Musa acuminata subsp. zebrina microsatellite Mbg01 sequence.
99111122122 1.000Musa acuminata subsp. zebrina microsatellite Mbg04 sequence.
1010111128128 1.000Musa acuminata subsp. zebrina microsatellite Mbg06 sequence.
1111111249249 1.000Musa acuminata subsp. zebrina microsatellite Mbg11 sequence.
121211110891089 1.000Musa acuminata subsp. zebrina ATP:citrate lyase gene, partial cds.
1313111779779 1.000Musa acuminata subsp. zebrina stomatal cytokinesis defective protein gene, partial cds.
141411110131013 1.000Musa acuminata subsp. zebrina electron transport protein gene, partial cds.
1515111529529 1.000Musa acuminata subsp. zebrina non-phototropic hypocotyl 3-like gene, partial sequence.
1616111891891 1.000Musa acuminata subsp. zebrina endoribonuclease dicer protein-like gene, partial sequence.
1717111888888 1.000Musa acuminata subsp. zebrina CASP protein-like gene, partial sequence.
1818111914914 1.000Musa acuminata subsp. zebrina zeaxanthin epoxidase gene, partial cds.
1919111503503 1.000Musa acuminata subsp. zebrina Na/H antiporter gene, partial cds.
202011110621062 1.000Musa acuminata subsp. zebrina DUF89 family protein gene, partial cds.
212111111741174 1.000Musa acuminata subsp. zebrina TCP-1-eta subunit gene, partial cds.
2222111841841 1.000Musa acuminata subsp. zebrina NAD+ synthase domain protein gene, partial cds.
2323111907907 1.000Musa acuminata subsp. zebrina ribosomal s6 RPS6-2 family protein gene, partial cds.
242411115961596 1.000Musa acuminata subsp. zebrina mRNA capping enzyme large subunit family protein gene, partial cds.
2525111786786 1.000Musa acuminata subsp. zebrina methylcrotonyl-CoA carboxylase beta chain gene, partial cds.
2626111799799 1.000Musa acuminata subsp. zebrina annexin-like protein gene, partial cds.
2727111673673 1.000Musa acuminata subsp. zebrina succinoaminoimidazole-carboximide ribonucleotide synthetase family protein gene, partial cds.
2828111784784 1.000Musa acuminata subsp. zebrina methionine aminopeptidase 1-like gene, partial sequence.
292911110061006 1.000Musa acuminata subsp. zebrina initiation factor 2B family protein gene, partial cds.
3030111854854 1.000Musa acuminata subsp. zebrina DNA polymerase delta catalytic subunit gene, partial cds.
3131111994994 1.000Musa acuminata chloroplast gene homologous to rbcL gene.
3232111365365 1.000Musa acuminata subsp. zebrina DNA for repetitive element Brep 1.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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