Cluster set at node Musa acuminata subsp. malaccensis (and only this node) (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
00111358358 1.000Musa acuminata subsp. malaccensis chloroplast DNA, tRNA-Leu, trnL-F intergenic spacer region, tRNA-Phe, partial and complete sequence.
139151191192 0.998Musa acuminata subsp. malaccensis partial Ty3-gypsy-like retrotransposon, clone W14a.
240111768768 1.000Musa acuminata subsp. malaccensis partial Ty3-gypsy-like retrotransposon, clone SY30A.
341110110831096 0.998Musa acuminata subsp. malaccensis partial Ty3-gypsy-like retrotransposon, clone rGyRT1.
4421241724794 0.957Musa acuminata subsp. malaccensis partial Ty3-gypsy-like retrotransposon, clone rGyLTR8.
5431121330330 1.000Musa acuminata subsp. malaccensis partial Ty3-gypsy-like retrotransposon, clone rMAcoRT1.1.
644181217671 0.591Musa acuminata subsp. malaccensis MuTR repeat element, clone Mal-TR3a.
7451111262478 0.761Musa acuminata subsp. malaccensis partial Ty3-gypsy-like retrotransposon, clone Mal-coTR5a.
846111323323 1.000Musa acuminata subsp. malaccensis partial Ty3-gypsy-like retrotransposon, clone Mal-coTR3c.
9331121505520 0.995Musa acuminata subsp. malaccensis partial nbs gene for NBS-LRR disease resistance protein, cultivar Pisang Madu, clone N371_MA.
102181544544 1.000Musa acuminata subsp. malaccensis endogenous badnavirus clone Mal8 ORFIII-like polyprotein gene, partial cds.
113412110731073 1.000Musa acuminata subsp. malaccensis voucher ITC0250 (CIRAD), ex situ collection ribosomal protein 16 (rpl16) gene, partial cds; chloroplast.
1235121972972 1.000Musa acuminata subsp. malaccensis voucher TM68 photosystem I P700 apoprotein A1 (psaA) gene, partial cds; psaA-ycf3 intergenic spacer, complete sequence; and photosystem I assembly protein (ycf3) gene, partial cds; chloroplast.
133612111601180 0.992Musa acuminata subsp. malaccensis voucher TM68 NADH dehydrogenase subunit 1 (ndhA) gene, partial cds; chloroplast.
143712122672267 1.000Musa acuminata subsp. malaccensis voucher ITC0250 (CIRAD), ex situ collection cytochrome f (petA) gene, partial cds; petA-psbJ intergenic spacer, complete sequence; photosystem II protein J (psbJ) gene, complete cds; psbJ-psbL intergenic spacer, complete sequence; photosystem II protein L (psbL) gene, complete cds; psbL-psbF intergenic spacer, complete sequence; and cytochrome b559 beta chain (psbF) gene, partial cds; chloroplast.
1547121533536 0.997Musa acuminata subsp. malaccensis clone MCL-5 CLV1-like LRR receptor kinase (CLAVATA1) mRNA, partial cds.
164811111581158 1.000Musa acuminata subsp. malaccensis resistance protein gene, partial cds.
174911111651165 1.000Musa acuminata subsp. malaccensis resistance gene candidate NBS-type protein (RGC1) gene, partial cds.
185011110971097 1.000Musa acuminata subsp. malaccensis resistance gene candidate NBS-type protein (RGC2) gene, partial cds.
195111110831083 1.000Musa acuminata subsp. malaccensis resistance gene candidate NBS-type protein (RGC3) gene, partial cds.
205211112031203 1.000Musa acuminata subsp. malaccensis resistance gene candidate NBS-type protein (RGC4) gene, partial cds.
215311111501150 1.000Musa acuminata subsp. malaccensis resistance gene candidate NBS-type protein (RGC5) gene, partial cds.
225411136993699 1.000Musa acuminata subsp. malaccensis NBS-type resistance protein RGC2 (RGC2) mRNA, complete cds.
235511143294329 1.000Musa acuminata subsp. malaccensis NBS-type resistance protein RGC5 (RGC5) mRNA, complete cds.
2456191605611 0.993Musa acuminata subsp. malaccensis partial argonaute gene for AGO PIWI domain protein, exon 1, clone MAL-AGO2.
256111791791 1.000Musa acuminata subsp. malaccensis bio-material CIRAD:Guadeloupe NEU0013 tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast.
26711112511251 1.000Musa acuminata subsp. malaccensis bio-material CIRAD:Guadeloupe NEU0013 trnK gene, partial sequence; and maturase K (matK) gene, partial cds; chloroplast.
2757111668668 1.000Musa acuminata subsp. malaccensis isolate LYB7F10 lycopene beta cyclase (LYB7) gene, partial cds.
2858111330330 1.000Musa acuminata subsp. malaccensis isolate PSY11F6 phytoene synthase (PSY11) gene, partial sequence.
2959111674674 1.000Musa acuminata subsp. malaccensis isolate YX-06 resistance protein gene, partial cds.
3060111651651 1.000Musa acuminata subsp. malaccensis isolate YX-11 resistance protein gene, partial cds.
3161121544544 1.000Musa acuminata subsp. malaccensis endogenous virus badnavirus clone AA207-6 ORFIII-like polyprotein gene, partial cds.
3262111523523 1.000M.acuminata repetitve DNA.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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