Cluster set at node Musa acuminata subsp. siamea (and only this node) (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
00111358358 1.000Musa acuminata subsp. siamea chloroplast DNA, tRNA-Leu, trnL-F intergenic spacer region, tRNA-Phe, partial and complete sequence.
133131518519 0.999Musa acuminata subsp. siamea partial nbs gene for NBS-LRR disease resistance protein, cultivar Khae Phrae, clone N211_SM.
23412110731073 1.000Musa acuminata subsp. siamea voucher TM051 ribosomal protein 16 (rpl16) gene, partial cds; chloroplast.
335121949972 0.988Musa acuminata subsp. siamea voucher TM91 (KU) photosystem I P700 apoprotein A1 (psaA) gene, partial cds; psaA-ycf3 intergenic spacer, complete sequence; and photosystem I assembly protein (ycf3) gene, partial cds; chloroplast.
43612111601161 1.000Musa acuminata subsp. siamea voucher TM051 NADH dehydrogenase subunit 1 (ndhA) gene, partial cds; chloroplast.
53712122782300 0.995Musa acuminata subsp. siamea voucher TM91 (KU) cytochrome f (petA) gene, partial cds; petA-psbJ intergenic spacer, complete sequence; photosystem II protein J (psbJ) gene, complete cds; psbJ-psbL intergenic spacer, complete sequence; photosystem II protein L (psbL) gene, complete cds; psbL-psbF intergenic spacer, complete sequence; and cytochrome b559 beta chain (psbF) gene, partial cds; chloroplast.
63111778778 1.000Musa acuminata subsp. siamea atpB-rbcL intergenic spacer, partial sequence; chloroplast.
74111673673 1.000Musa acuminata subsp. siamea 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence; chloroplast.
85111786786 1.000Musa acuminata subsp. siamea ribosomal protein S16 (rps16) gene, intron; chloroplast.
96111807807 1.000Musa acuminata subsp. siamea tRNA-Leu (trnL(UAA)) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF(GAA)) gene, partial sequence; chloroplast.
1038111544544 1.000Musa acuminata subsp. siamea endogenous virus badnavirus clone AA173-3 ORFIII-like polyprotein gene, partial cds.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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