Cluster set at subtree whose root is Glomeromycota (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
0-10166146241452385 0.346Glomus mycorrhizal symbiont of Marchantia foliacea 18S rRNA gene (partial) and ITS1 (partial), Otira valley, clone 2.
2-5100281164 0.899Glomus claroideum isolate MT109-2 beta-tubulin gene, partial cds.
4-51182160580 0.568Glomus etunicatum marker A2 genomic sequence.
5-41241296553 0.729Glomus etunicatum marker A3 genomic sequence.
7-4962225540 0.576Glomus etunicatum marker A9 genomic sequence.
11-41822249565 0.743Glomus etunicatum marker 4j genomic sequence.
12-51462222516 0.543Glomus etunicatum marker 5F genomic sequence.
20-77597128 0.931Glomus claroideum partial mRNA for Ste12-like transcription factor (ste12 gene), isolate BEG31.
21-775273275 0.999Acaulospora laevis partial mRNA for Ste12-like transcription factor (ste12 gene), isolate BEG13.
25-7193510674 0.860Glomus sp. HM-CL5 partial LSU gene for large ribosomal subunit.
26-99713451558 0.934Glomus diaphanum partial atub gene for alpha-tubulin, exons 1-2.
27-52233144381099 0.696Glomus claroideum partial btub gene for beta tubulin, exons 1-3.
32-4183360360 1.000Glomus proliferum isolate MUCL 41827 Cu-Zn superoxide dismutase gene, partial cds.
48-14224621621 1.000Glomus custos strain DAOM 236361 F-ATPase beta subunit (atp2) gene, partial cds; mitochondrial.
49-203794381517 0.497Scutellospora heterogama isolate AFTOL-ID 138 elongation factor 1-alpha (EF1-alpha) gene, partial cds.
50-152947502754 0.524Glomus mosseae H(+)-ATPase (HA5) mRNA, complete cds.
51-122328521665 0.548Glomus irregulare strain DAOM 240477 phosphate transporter gene, partial cds.
56-84336615015 0.467Glomus coronatum mitochondrial partial lsu gene for large subunit ribosomal RNA and LAGLIDADG homing endonuclease, isolate ZTL.
57-715615033476 0.523Gigaspora gigantea RNA polymerase II largest subunit (RPB1) gene, partial cds.
65-59223193962 0.668Glomus mosseae RNA polymerase II largest subunit (RPB1) gene, partial cds.
107-741627143360 0.881Geosiphon pyriformis partial 28S rRNA gene.
109-45428903584 0.921Gigaspora gigantea RNA polymerase II second largest subunit (RPB2) gene, partial cds.
116-585614622 0.993Glomus mosseae chitin synthase (CHS) gene, partial cds.
126-6125617621 0.995Scutellospora calospora chitin synthase (CHS) gene, partial cds.
136-494925977 0.959Glomus caledonium partial act gene for actin, exons 1-4, isolate UY1326.1.3_spore3.
143-6181456582 0.948Acaulospora sp. 1v5.4/1 partial 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and partial 28S rRNA gene, clone 1v5.4-1.
155-5241451660 0.807Acaulospora mellea isolate AM1 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
160-441669677 0.993Entrophospora sp. shylm17 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
167-111373234659 0.679Gigaspora gigantea isolate GIG1 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
201-52438889 0.995Gigaspora rosea 18S ribosomal RNA gene, partial sequence.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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