Cluster set at subtree whose root is Fornicata (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
0-825214751622 0.443Giardia sp. mRNA for microtubule-associated protein beta-giardin.
1-121285323 0.941Giardia muris small subunit rRNA, 3' end, large subunit rRNA, 5' end, and 5.8S rRNA.
2-111406406 1.000Giardia muris large subunit rRNA, 3' end.
3-111906906 1.000Giardia muris cysteine protease (GMCP1) mRNA, complete cds.
4-221456477 0.978Giardia ardeae triose phosphate isomerase (TPI) gene, partial cds.
5-103346231399 0.684Spironucleus barkhanus mRNA for elongation factor 1 alpha, partial cds.
6-111430430 1.000Giardia muris 18S ribosomal RNA gene, partial sequence.
7-121705707 0.999Giardia muris variant-specific surface protein 01 gene, partial cds.
8-111766766 1.000Giardia muris variant-specific surface protein 02 gene, partial cds.
9-111706706 1.000Giardia muris variant-specific surface protein 03 gene, partial cds.
10-11110411041 1.000Giardia muris variant-specific surface protein 04 gene, partial cds.
11-11111211121 1.000Giardia muris variant-specific surface protein 06 gene, partial cds.
12-2221616621 0.998Giardia ardeae clone 1 actin gene, partial cds.
13-111349349 1.000Giardia ardeae small subunit rRNA, 3' end, large subunit rRNA, 5' end, and 5.8S rRNA.
14-111407407 1.000Giardia ardeae large subunit rRNA, 3' end.
15-11133333333 1.000G.ardeae genes for 5.8S rRNA, LSU rRNA and SSU rRNA.
16-528113982354 0.625Giardia microti small subunit ribosomal RNA gene, complete sequence.
17-22216901117 0.890Giardia ardeae glutamate dehydrogenase (GDH) gene, partial cds.
18-1718512081630 0.901Trepomonas agilis 18S ribosomal RNA gene.
19-1947129101878 0.612Spironucleus vortens alpha-tubulin gene, complete cds.
20-222888891 0.998Diplomonad ATCC50380 glyceraldehyde-3-phosphate dehydrogenase gene, partial cds.
21-111920920 1.000Hexamita inflata dynein beta chain gene, partial cds.
22-111928928 1.000Hexamita inflata elongation factor 1-alpha gene, 3' UTR and partial cds.
23-111813813 1.000Hexamita inflata alpha-tubulin gene, 3' UTR and partial cds.
24-111256256 1.000Hexamita inflata translation initiation factor-2 gamma subunit gene, partial cds.
25-11121012101 1.000Hexamita inflata dynein heavy chain homolog (hdyhh) gene, complete cds.
26-12110601060 1.000Hexamita inflata enolase 1 gene, partial cds.
27-11123692369 1.000Hexamita inflata putative pyrophosphate-dependent phosphofructokinase (pp-pfk) gene, complete cds.
28-111789789 1.000Hexamita inflata glutamate dehydrogenase (gdh) gene, partial cds.
29-121689021358 0.860Kipferlia bialata gene for beta-tubulin, partial cds, strain: NY0166.
30-910716572278 0.800Spironucleus barkhanus cytosolic heat shock protein 90 (HSP90) mRNA, complete cds.
31-11110591059 1.000Hexamita sp. carbamate kinase (CBK) gene, complete cds.
32-111537537 1.000Spironucleus muris elongation factor 1 alpha gene, partial cds.
33-111889889 1.000Trepomonas agilis glceraldehyde-3-phosphate dehydrogenase gene, partial cds.
34-11142944294 1.000Trepomonas agilis 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
35-11119521952 1.000Spironucleus vortens H3 histone gene, complete cds.
36-11113151315 1.000Spironucleus vortens small subunit ribosomal RNA gene, partial sequence.
37-12114661466 1.000Spironucleus vortens small subunit rRNA gene, copy 2, partial sequence.
38-111631631 1.000Spironucleus vortens translation initiation factor-2 gamma subunit gene, partial cds.
39-11110571057 1.000Spironucleus vortens enolase gene, partial cds.
40-11111131113 1.000Spironucleus vortens glutamate dehydrogenase (gdh) gene, partial cds.
41-2231247384 0.820Giardia microti isolate P270 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence.
42-41511264513 0.585Giardia psittaci small subunit ribosomal RNA gene, partial sequence.
43-2111468692 0.751Giardia microti isolate 3460 triosephosphate isomerase (TPI) gene, partial cds.
44-121411688 0.799Spironucleus barkhanus ribosomal protein L7A mRNA, partial cds.
45-1141564650 0.877Spironucleus barkhanus glutamate dehydrogenase 1 (gdh1) gene, partial cds.
46-1111114791446 0.652Diplomonad ATCC50330 small subunit rRNA gene, copy 1, partial sequence.
47-12125292542 0.997Spironucleus barkhanus mRNA for elongation factor 2, partial cds.
48-11148924892 1.000Spironucleus barkhanus isolate Sp4 genomic sequence.
49-11118561856 1.000Spironucleus barkhanus isolate Sp5 uridine kinase gene, partial cds.
50-11123652365 1.000Spironucleus barkhanus isolate Sp6 5'-nucleotidase gene, complete cds.
51-11141634163 1.000Spironucleus barkhanus isolate Sp7 hypothetical protein gene, partial cds; UDP-glucose 4-epimerase gene, complete cds; and histone-lysine N-methyltransferase gene, partial cds.
52-11154895489 1.000Spironucleus barkhanus isolate Sp8 hypothetical protein gene, partial cds; phosphopantothenoylcysteine decarboxylase gene, complete cds; and hypothetical protein gene, partial cds.
53-11134183418 1.000Spironucleus barkhanus isolate Sp10 hypothetical protein genes, complete cds.
54-111658658 1.000Spironucleus barkhanus triosephosphate isomerase (TPI) gene, partial cds.
55-12118961974 0.980Spironucleus barkhanus cytosolic heat shock protein 70 (hsp70) mRNA, partial cds.
56-11121472147 1.000Spironucleus barkhanus mRNA for heat shock protein 90, partial cds.
57-111783783 1.000Diplomonad ATCC50380 alpha-tubulin gene, 3' UTR and partial cds.
58-22135493759 0.972Spironucleus salmonicida pyruvate-flavodoxin oxidoreductase 3 (SS50377_15961) gene, complete cds; hydrogenosome.
59-111521521 1.000Spironucleus barkhanus pyruvate:ferredoxin oxidoreductase (PFO) gene, partial cds.
60-22116721686 0.996Spironucleus barkhanus putative iron hydrogenase HydA gene, complete cds.
61-111932932 1.000Spironucleus barkhanus thioredoxin reductase mRNA, partial cds.
62-11115551555 1.000Spironucleus barkhanus glucose-6-phosphate isomerase (GPI) mRNA, partial cds.
63-11110141014 1.000Spironucleus barkhanus glucokinase-like protein mRNA, partial cds.
64-11122572257 1.000Spironucleus barkhanus sulfide dehydrogenase (sud) gene, partial cds.
65-11110231023 1.000Spironucleus barkhanus fructose-1,6-bisphosphate aldolase (FBA) mRNA, partial cds.
66-11113991399 1.000Spironucleus barkhanus glutamate dehydrogenase (gdh) mRNA, partial cds.
67-22115391741 0.942Spironucleus salmonicida chaperonin 60 (SS50377_14834) gene, complete cds; hydrogenosome.
68-11118161816 1.000Spironucleus barkhanus prolyl tRNA synthetase (proS) gene, partial cds.
69-11119021902 1.000Spironucleus barkhanus alanyl tRNA synthetase (alaS) mRNA, partial cds.
70-11110861086 1.000Spironucleus barkhanus branched chain amino acid transferase (ilvE) mRNA, partial cds.
71-111918918 1.000Spironucleus barkhanus threonine dehydratase (ilvA) gene, partial cds.
72-11115941594 1.000Spironucleus barkhanus CTP synthetase (pyrG) mRNA, partial cds.
73-111414414 1.000Spironucleus barkhanus deoxyribose-phosphate aldolase (deoC) gene, partial cds.
74-111372372 1.000Spironucleus barkhanus glucosamine-6-phosphate isomerase (nagB1) gene, partial cds.
75-11133033303 1.000Spironucleus barkhanus glucosamine-6-phosphate isomerase (nagB2) gene, complete cds.
76-22126772869 0.967Spironucleus salmonicida alcohol dehydrogenase E (SS50377_16326) gene, complete cds; hydrogenosome.
77-11112241224 1.000Spironucleus barkhanus alcohol dehydrogenase (adh) mRNA, partial cds.
78-22121592427 0.945Spironucleus salmonicida acetyl-CoA synthetase (SS50377_17557) gene, complete cds; hydrogenosome.
79-22118971959 0.984Spironucleus salmonicida hybrid cluster protein 2 (SS50377_15959) gene, complete cds; hydrogenosome.
80-22112411498 0.914Spironucleus salmonicida A-type flavoprotein 2 (SS50377_10814) gene, complete cds; hydrogenosome.
81-111707707 1.000Spironucleus barkhanus translation elongation factor 1 beta (EF-1 beta) mRNA, partial cds.
82-111982982 1.000Spironucleus barkhanus coatomer-like protein beta subunit (B-COP) gene, partial cds.
83-111653653 1.000Spironucleus barkhanus vacuolar protein sorting 26-like (Vps26) gene, partial cds.
84-111604604 1.000Spironucleus barkhanus thioredoxin peroxidase mRNA, partial cds.
85-111124124 1.000Giardia lamblia ATCC 50803 GlsR26 H/ACA box snoRNA, complete sequence.
86-111119119 1.000Giardia lamblia ATCC 50803 GlsR27 H/ACA box snoRNA, complete sequence.
87-111121121 1.000Giardia lamblia ATCC 50803 U1 small nuclear RNA snRNA, complete sequence.
88-111142142 1.000Giardia lamblia ATCC 50803 U2 small nuclear RNA snRNA, complete sequence.
89-1119999 1.000Giardia lamblia ATCC 50803 U4 small nuclear RNA snRNA, complete sequence.
90-111105105 1.000Giardia lamblia ATCC 50803 U6 small nuclear RNA snRNA, complete sequence.
91-111120120 1.000Giardia lamblia ATCC 50803 GlsR28 ncRNA, partial sequence.
92-11110211021 1.000Giardia intestinalis alpha-3 giardin gene, complete cds.
93-111525525 1.000Giardia lamblia ATCC 50803 FKBP gene, complete cds.
94-2151509715 0.975Giardia psittaci gene for glutamate dehydrogenase, partial cds, isolate: 5282-1.
95-221215246 0.937Giardia sp. SM-2004 ribonuclease P RNA subunit gene, partial sequence.
96-151564564 1.000Spironucleus salmonicida from Onchorhyncus tshawytscha glutamate dehydrogenase 1 (gdh1) gene, partial cds.
97-111516516 1.000Spironucleus salmonicida 2Fe-2S ferredoxin 1 (SS50377_14476) gene, complete cds; hydrogenosome.
98-111478478 1.000Spironucleus salmonicida 2Fe-2S ferredoxin 2 (SS50377_11457) gene, complete cds; hydrogenosome.
99-11114451445 1.000Spironucleus salmonicida cysteine desulfurase (SS50377_15482) gene, complete cds; hydrogenosome.
100-111348348 1.000Spironucleus salmonicida frataxin (SS50377_10981) gene, complete cds; hydrogenosome.
101-111895895 1.000Spironucleus salmonicida nitrogen-fixing NifU domain-containing protein (SS50377_19167) gene, complete cds; hydrogenosome.
102-111730730 1.000Spironucleus salmonicida nifU-like protein (SS50377_11862) gene, complete cds; hydrogenosome.
103-11118151815 1.000Spironucleus salmonicida chaperone protein DnaK (SS50377_17850) gene, complete cds; hydrogenosome.
104-111431431 1.000Spironucleus salmonicida co-chaperone GrpE (SS50377_11178) gene, complete cds; hydrogenosome.
105-111671671 1.000Spironucleus salmonicida co-chaperone HscB (SS50377_12502) gene, complete cds; hydrogenosome.
106-111548548 1.000Spironucleus salmonicida mitochondrial import inner membrane translocase subunit TIM14 (SS50377_16563) gene, complete cds; hydrogenosome.
107-11110711071 1.000Spironucleus salmonicida Tom40 (SS50377_17947) gene, complete cds; hydrogenosome.
108-11113961396 1.000Spironucleus salmonicida FeFe-hydrogenase assembly protein HydE (SS50377_14972) gene, complete cds; hydrogenosome.
109-11116991699 1.000Spironucleus salmonicida FeFe-hydrogenase assembly protein HydF (SS50377_16918) gene, complete cds; hydrogenosome.
110-11120352035 1.000Spironucleus salmonicida FeFe-hydrogenase assembly protein HydG (SS50377_17876) gene, complete cds; hydrogenosome.
111-11115801580 1.000Spironucleus salmonicida FeFe-hydrogenase 1 (SS50377_12678) gene, complete cds; hydrogenosome.
112-11118751875 1.000Spironucleus salmonicida FeFe-hydrogenase 2 (SS50377_10897) gene, complete cds; hydrogenosome.
113-11115451545 1.000Spironucleus salmonicida FeFe-hydrogenase 3 (SS50377_14286) gene, complete cds; hydrogenosome.
114-11124272427 1.000Spironucleus salmonicida FeFe-hydrogenase 4 (SS50377_15891) gene, complete cds; hydrogenosome.
115-11117221722 1.000Spironucleus salmonicida FeFe-hydrogenase 6 (SS50377_10025) gene, complete cds; hydrogenosome.
116-11113651365 1.000Spironucleus salmonicida FeFe-hydrogenase 7 (SS50377_16154) gene, complete cds; hydrogenosome.
117-11141894189 1.000Spironucleus salmonicida pyruvate-flavodoxin oxidoreductase 1 (SS50377_12338) gene, complete cds; hydrogenosome.
118-11140484048 1.000Spironucleus salmonicida pyruvate-flavodoxin oxidoreductase 2 (SS50377_18347) gene, complete cds; hydrogenosome.
119-11140184018 1.000Spironucleus salmonicida pyruvate-flavodoxin oxidoreductase 4 (SS50377_12070) gene, complete cds; hydrogenosome.
120-11135113511 1.000Spironucleus salmonicida pyruvate-flavodoxin oxidoreductase 5 (SS50377_10765) gene, complete cds; hydrogenosome.
121-11117421742 1.000Spironucleus salmonicida acetyl-CoA synthetase (SS50377_10513) gene, complete cds; hydrogenosome.
122-111626626 1.000Spironucleus salmonicida putative glycine cleavage system H protein (SS50377_14064) gene, complete cds; hydrogenosome.
123-11115141514 1.000Spironucleus salmonicida serine hydroxymethyltransferase (SS50377_17865) gene, complete cds; hydrogenosome.
124-11119621962 1.000Spironucleus salmonicida malic enzyme (SS50377_19181) gene, complete cds; hydrogenosome.
125-11113851385 1.000Spironucleus salmonicida malate dehydrogenase 1 (SS50377_15717) gene, complete cds; hydrogenosome.
126-11111751175 1.000Spironucleus salmonicida malate dehydrogenase 2 (SS50377_15744) gene, complete cds; hydrogenosome.
127-11118351835 1.000Spironucleus salmonicida A-type flavoprotein 7 (SS50377_12137) gene, complete cds; hydrogenosome.
128-111893893 1.000Spironucleus salmonicida rubrerythrin 1 (SS50377_11237) gene, complete cds; hydrogenosome.
129-111688688 1.000Spironucleus salmonicida rubrerythrin 2 (SS50377_11802) gene, complete cds; hydrogenosome.
130-111871871 1.000Spironucleus salmonicida adenylate kinase 1 (SS50377_10719) gene, complete cds; hydrogenosome.
131-11113991399 1.000Spironucleus salmonicida adenylate kinase 2 (SS50377_12479) gene, complete cds; hydrogenosome.
132-111918918 1.000Spironucleus salmonicida adenylate kinase 3 (SS50377_15603) gene, complete cds; hydrogenosome.
133-11110261026 1.000Spironucleus salmonicida adenylate kinase 4 (SS50377_14315) gene, complete cds; hydrogenosome.
134-11121012101 1.000Spironucleus salmonicida thioredoxin reductase (SS50377_14835) gene, complete cds; hydrogenosome.
135-11113751375 1.000Spironucleus salmonicida NADH oxidase (SS50377_12178) gene, complete cds; hydrogenosome.
136-11120282028 1.000Spironucleus salmonicida hybrid cluster protein 1 (SS50377_12434) gene, complete cds; hydrogenosome.
137-11115111511 1.000Octomitus intestinalis small subunit ribosomal RNA gene, partial sequence.
138-11714981405 0.480Spironucleus salmonis small subunit ribosomal RNA gene, partial sequence.
139-141423510 0.957Giardia intestinalis assemblage A isolate SB53 triose phosphate isomerase (TPI) gene, partial cds.
140-111903903 1.000Trepomonas sp. PC1 mRNA for elongation factor 2, partial cds.
141-111891891 1.000Trepomonas sp. PC1 mRNA for heat shock protein 70, partial cds.
142-111798798 1.000Trepomonas sp. PC1 mRNA for heat shock protein 90, partial cds.
143-26120312050 0.994Retortamonas sp. ATCC 50375 small subunit ribosomal RNA gene, complete sequence.
144-34216932121 0.860Ergobibamus cyprinoides hsp90 gene for heat shock protein 90, partial cds, strain: CL.
145-111520520 1.000Carpediemonas membranifera hsp70 gene for heat shock protein 70, partial cds, strain: BICM.
146-44311951371 0.904Ergobibamus cyprinoides gene for translation elongation factor 1 alpha, complete cds, strain: CL.
147-111513513 1.000Carpediemonas membranifera gene for translation elongation factor 2, partial cds, strain: BICM.
148-12117171763 0.987Carpediemonas membranifera small subunit ribosomal RNA gene, complete sequence.
149-23213871938 0.810Ergobibamus cyprinoides hsp70 gene for heat shock protein 70, partial cds, strain: CL.
150-121721851 0.924Carpediemonas membranifera carbamate kinase (CK) gene, partial cds.
151-111356356 1.000Carpediemonas membranifera clone 1 carbamate kinase (CK) mRNA, partial cds.
152-22117041705 1.000Dysnectes sp. SIVOTA small subunit ribosomal RNA gene, partial sequence.
153-111502502 1.000Dysnectes brevis hsp70 gene for heat shock protein 70, partial cds, strain: NY0165.
154-11112601260 1.000Dysnectes brevis gene for translation elongation factor 1 alpha, partial cds, strain: NY0165.
155-11122932293 1.000Dysnectes brevis gene for translation elongation factor 2, partial cds, strain: NY0165.
156-11114471447 1.000Chilomastix wenrichi isolate CAVIA2 small subunit ribosomal RNA gene, complete sequence.
157-11118481848 1.000Retortamonas sp. Vale Fe-hydrogenase mRNA, complete cds.
158-11120822082 1.000Retortamonas sp. Vale Fe-hydrogenase mRNA, complete cds.
159-11143864386 1.000Retortamonas sp. Vale pyruvate:ferredoxin oxidoreductase mRNA, complete cds.
160-14123442461 0.987Chilomastix mesnili clone 1_1 small subunit ribosomal RNA gene, complete sequence.
161-1214171496 0.974Enteromonadidae sp. PYX isolate PSEUD 16S-like ribosomal RNA gene, partial sequence.
162-22216091683 0.978Hicanonectes teleskopos 18S small subunit ribosomal RNA gene, partial sequence.
163-11116931693 1.000Hicanonectes teleskopos hsp90 gene for heat shock protein 90, partial cds, strain: SB.
164-11113201320 1.000Kipferlia bialata hsp70 gene for heat shock protein 70, partial cds, strain: NY0173.
165-11119901990 1.000Kipferlia bialata hsp90 gene for heat shock protein 90, partial cds, strain: NY0173.
166-11112611261 1.000Kipferlia bialata gene for translation elongation factor 1 alpha, partial cds, strain: NY0173.
167-11122722272 1.000Kipferlia bialata gene for translation elongation factor 2, partial cds, strain: NY0173.
168-111117071761 0.974Kipferlia bialata isolate NY0173 small subunit ribosomal RNA gene, partial sequence.
169-22217421756 0.996Carpediemonas sp. CL small subunit ribosomal RNA gene, partial sequence.
170-11117351735 1.000Carpediemonas sp. NY0171 hsp90 gene for heat shock protein 90, partial cds.
171-11113091309 1.000Carpediemonas sp. NY0171 gene for translation elongation factor 1 alpha, partial cds.
172-22121842380 0.959Carpediemonas sp. PCE small subunit ribosomal RNA gene, partial sequence.
173-11113721372 1.000Chilomastix caulleryi gene for beta-tubulin, partial cds.
174-111999999 1.000Chilomastix caulleryi hsp70 gene for heat shock protein 70, partial cds.
175-11116321632 1.000Chilomastix caulleryi hsp90 gene for heat shock protein 90, partial cds.
176-11119211921 1.000Chilomastix caulleryi gene for translation elongation factor 1 alpha, complete cds.
177-11119251925 1.000Chilomastix caulleryi gene for translation elongation factor 2, partial cds.
178-11132723272 1.000Chilomastix caulleryi gene for small subunit ribosomal RNA, partial sequence.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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