Cluster set at subtree whose root is Lynx (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
004241288378 0.957Lynx canadensis voucher Lca7 16S ribosomal RNA gene, partial sequence; mitochondrial.
11184181220318 0.743Lynx rufus NADH dehydrogenase subunit 5 gene, partial cds; mitochondrial.
284701100423 0.650Lynx pardinus partial mitochondrial gene for cytochrome b, isolate 1.
574911269725 0.903Lynx lynx haplotype 16 control region, partial sequence; mitochondrial.
6134418361094 0.834Lynx rufus Smcy gene, intron 4, complete sequence.
7564161373382 0.999Lynx rufus voucher Lru73 12S ribosomal RNA gene, partial sequence; mitochondrial.
864161187204 0.922Lynx canadensis ATP synthase F0 subunit 8 (ATP8) gene, complete cds; mitochondrial.
914441960960 1.000Lynx rufus Ube1y gene, exon 18 and partial cds.
1015451713834 0.887Lynx rufus isolate LR041509 Y-linked zinc finger protein (ZFY) gene, intron and partial cds.
11104418801274 0.885Lynx lynx interphotoreceptor retinoid-binding protein (irbp) gene, partial cds.
121451837885 0.979Lynx canadensis TTR gene, partial sequence.
1717451639640 1.000Lynx canadensis APP gene, partial sequence.
1860441817817 1.000Lynx rufus CALB gene, partial sequence.
1918471299332 0.971Lynx canadensis cholinergic receptor nicotinic alpha polypeptide 1 precursor (CHRNA1) gene, partial cds.
201944113681368 1.000Lynx rufus CLU gene, partial sequence.
2120441518518 1.000Lynx rufus CMA1 (CMA1) gene, partial cds.
2423441441441 1.000Lynx canadensis GATA3 gene, partial sequence.
2524441670670 1.000Lynx rufus GHR (GHR) gene, partial cds.
2625441622622 1.000Lynx rufus GNAZ (GNAZ) gene, partial cds.
2826441349350 0.998Lynx canadensis HK1 gene, partial sequence.
2927441296296 1.000Lynx rufus NCL (NCL) gene, partial cds.
3028441290290 1.000Lynx pardinus PNOC (PNOC) gene, partial cds.
3129441473473 1.000Lynx rufus RAG2 (RAG2) gene, partial cds.
3230441551551 1.000Lynx rufus RSA2 gene, partial sequence.
3331441371371 1.000Lynx rufus SIL gene, partial sequence.
3432441587590 0.999Lynx pardinus TCP1 (TCP1) gene, partial cds.
3533441510511 0.999Lynx canadensis ALAS gene, partial sequence.
3634441670670 1.000Lynx rufus ATP-7A (ATP7A) gene, partial cds.
3735441318318 1.000Lynx pardinus IL2RG (IL2RG) gene, partial cds.
3937451823927 0.924Lynx rufus isolate LR041509 X-linked zinc finger protein (ZFX) gene, intron and partial cds.
403844127222725 0.999Lynx lynx sex-determining region Y protein (SRY) gene, complete cds.
638344165746679 0.995Lynx lynx clone LLY1 carboxylesterase 7-like gene, complete sequence.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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