Cluster set at subtree whose root is Lynx (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
004241288378 0.957Lynx canadensis voucher Lca7 16S ribosomal RNA gene, partial sequence; mitochondrial.
11184181220318 0.743Lynx rufus NADH dehydrogenase subunit 5 gene, partial cds; mitochondrial.
284701100423 0.650Lynx pardinus partial mitochondrial gene for cytochrome b, isolate 1.
355111879879 1.000Lynx lynx H19 RNA gene, partial sequence.
4424111781181 0.999Lynx rufus strain lrux zinc finger protein Zfx (Zfx) gene, partial cds.
574911269725 0.903Lynx lynx haplotype 16 control region, partial sequence; mitochondrial.
6134418361094 0.834Lynx rufus Smcy gene, intron 4, complete sequence.
7564161373382 0.999Lynx rufus voucher Lru73 12S ribosomal RNA gene, partial sequence; mitochondrial.
864161187204 0.922Lynx canadensis ATP synthase F0 subunit 8 (ATP8) gene, complete cds; mitochondrial.
914441960960 1.000Lynx rufus Ube1y gene, exon 18 and partial cds.
1015451713834 0.887Lynx rufus isolate LR041509 Y-linked zinc finger protein (ZFY) gene, intron and partial cds.
11104418801274 0.885Lynx lynx interphotoreceptor retinoid-binding protein (irbp) gene, partial cds.
121451837885 0.979Lynx canadensis TTR gene, partial sequence.
1357111654654 1.000Lynx lynx beta fibrinogen gene, intron 7.
14933110381044 0.998Lynx rufus NADH dehydrogenase subunit 2 (ND2) gene, complete cds; mitochondrial.
155822113681378 0.996Lynx canadensis NADH dehydrogenase subunit 4 (ND4) gene, complete cds; mitochondrial.
1659111567567 1.000Lynx lynx isolate 3 follicle stimulating hormone receptor (FSHR) mRNA, partial cds.
1717451639640 1.000Lynx canadensis APP gene, partial sequence.
1860441817817 1.000Lynx rufus CALB gene, partial sequence.
1918471299332 0.971Lynx canadensis cholinergic receptor nicotinic alpha polypeptide 1 precursor (CHRNA1) gene, partial cds.
201944113681368 1.000Lynx rufus CLU gene, partial sequence.
2120441518518 1.000Lynx rufus CMA1 (CMA1) gene, partial cds.
2221331706710 0.996Lynx rufus DGKG2 gene, partial sequence.
2322331412412 1.000Lynx rufus FES gene, partial sequence.
2423441441441 1.000Lynx canadensis GATA3 gene, partial sequence.
2524441670670 1.000Lynx rufus GHR (GHR) gene, partial cds.
2625441622622 1.000Lynx rufus GNAZ (GNAZ) gene, partial cds.
2761331673673 1.000Lynx rufus GNB1 gene, partial sequence.
2826441349350 0.998Lynx canadensis HK1 gene, partial sequence.
2927441296296 1.000Lynx rufus NCL (NCL) gene, partial cds.
3028441290290 1.000Lynx pardinus PNOC (PNOC) gene, partial cds.
3129441473473 1.000Lynx rufus RAG2 (RAG2) gene, partial cds.
3230441551551 1.000Lynx rufus RSA2 gene, partial sequence.
3331441371371 1.000Lynx rufus SIL gene, partial sequence.
3432441587590 0.999Lynx pardinus TCP1 (TCP1) gene, partial cds.
3533441510511 0.999Lynx canadensis ALAS gene, partial sequence.
3634441670670 1.000Lynx rufus ATP-7A (ATP7A) gene, partial cds.
3735441318318 1.000Lynx pardinus IL2RG (IL2RG) gene, partial cds.
3836331898899 1.000Lynx canadensis PLP gene, partial sequence.
3937451823927 0.924Lynx rufus isolate LR041509 X-linked zinc finger protein (ZFX) gene, intron and partial cds.
403844127222725 0.999Lynx lynx sex-determining region Y protein (SRY) gene, complete cds.
416211129552955 1.000Lynx lynx steroid 21-hydroxylase gene, complete cds.
4263141579592 0.984Lynx lynx isolate 2 apolipoprotein B editing enzyme catalytic polypeptide-like 3C mRNA, complete cds, alternatively spliced.
4364111582582 1.000Lynx lynx apolipoprotein B editing enzyme catalytic polypeptide-like 3H mRNA, complete cds.
4465111179179 1.000Lynx lynx isolate D27 CD44 gene, exon v3 and partial cds, alternatively spliced.
4566111788788 1.000Lynx lynx angio-associated migratory cell protein (AAMP) gene, partial sequence.
4667111483483 1.000Lynx lynx desmin gene, partial cds.
4768341446652 0.898Lynx canadensis growth hormone receptor (GHR) gene, partial cds.
4869111794794 1.000Lynx lynx natural resistance associated macrophage protein (NRAMP1) gene, partial cds.
4970111840840 1.000Lynx lynx nucleoporin Nup107 gene, partial cds.
5071111387387 1.000Lynx lynx phosphodiesterase 6B gene, partial cds.
5172111845845 1.000Lynx lynx SH2 domain protein C1 gene, partial cds.
5273111443443 1.000Lynx lynx serine protease inhibitor Kazal-type 5 (SPINK5) gene, partial cds.
5374111684684 1.000Lynx lynx tyrosine aminotransferase gene, partial cds.
5475111843843 1.000Lynx lynx tyrosine aminotransferase gene, intron.
55431131238238 1.000Lynx lynx MHC class II antigen (Lyly-DRB) gene, Lyly-DRB*13 allele, exon 2 and partial cds.
5676371623783 0.876Lynx lynx voucher PL-IGAB-ZI24 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
577711113141314 1.000Lynx lynx apolipoprotein B mRNA editing enzyme catalytic polypeptide 3 mRNA, complete cds.
5878221354368 0.981Lynx lynx adenosine A3 receptor (ADORA3) gene, partial cds.
5979231933940 0.997Lynx canadensis apolipoprotein B (APOB) gene, exon 26 and partial cds.
6080221562566 0.996Lynx canadensis brain-derived neurotrophic factor (BDNF) gene, exon 1 and partial cds.
6181111687687 1.000Lynx lynx FBN1 gene, partial sequence.
6282111745745 1.000Lynx lynx androgen receptor (AR) gene, partial cds.
638344165746679 0.995Lynx lynx clone LLY1 carboxylesterase 7-like gene, complete sequence.
6484141810838 0.986Lynx lynx isolate HCroD control region, partial sequence; mitochondrial.
65124111127127 1.000Lynx canadensis microsatellite Lc106 sequence.
66125111754754 1.000Lynx canadensis microsatellite Lc109 sequence.
67126111106106 1.000Lynx canadensis microsatellite Lc110 sequence.
68127111165165 1.000Lynx canadensis microsatellite Lc111 sequence.
69128111251251 1.000Lynx canadensis microsatellite Lc118 sequence.
70129111249249 1.000Lynx canadensis microsatellite Lc120 sequence.
71130121199199 1.000Lynx canadensis isolate LY3 tooth enamel protein (AMEL) gene, exon 5 and partial cds.
72131111681681 1.000Lynx canadensis ATP synthase F0 subunit 6 (ATP6) gene, complete cds; mitochondrial.
7313211115451545 1.000Lynx canadensis cytochrome c oxidase subunit I (COX1) gene, complete cds; mitochondrial.
74133111684684 1.000Lynx canadensis cytochrome c oxidase subunit II (COX2) gene, complete cds; mitochondrial.
75134111784784 1.000Lynx canadensis cytochrome c oxidase subunit III (COX3) gene, complete cds; mitochondrial.
761135111401140 1.000Lynx rufus isolate AN-3 cytochrome b (cytb) gene, complete cds; mitochondrial.
77135111957957 1.000Lynx canadensis NADH dehydrogenase subunit 1 (ND1) gene, complete cds; mitochondrial.
78136111347347 1.000Lynx canadensis NADH dehydrogenase subunit 3 (ND3) gene, complete cds; mitochondrial.
79137111297297 1.000Lynx canadensis NADH dehydrogenase subunit 4L (ND4L) gene, complete cds; mitochondrial.
804027819491830 0.525Lynx canadensis NADH dehydrogenase subunit 5 (ND5) gene, complete cds; mitochondrial.
81138111320320 1.000Lynx canadensis collagen type X alpha 1 (COL10A1) gene, partial cds.
82139111434434 1.000Lynx canadensis transducin alpha 1 (GNAT1) gene, partial cds.
838512110761108 0.986Lynx canadensis recombination activating protein 1 (RAG1) gene, exon 1 and partial cds.
84140111683683 1.000Lynx canadensis Wilms tumor 1 (WT1) gene, partial cds.
85141111381381 1.000Lynx canadensis feline sarcoma protooncogene (FES) gene, partial cds.
86142221272272 1.000Lynx canadensis rhodopsin (RHO1) gene, partial cds.
873911110331033 1.000Lynx canadensis voucher UAM:Mamm:24881 16S ribosomal RNA gene, partial sequence; mitochondrial.
88111221407489 0.916Lynx canadensis UDP-glucuronosyltransferase 1A1 (UGT1A1) gene, exon 1 and partial cds.
89112221850850 1.000Lynx rufus UDP-glucuronosyltransferase 1A6 (UGT1A6) pseudogene, exon 1.
90123221922950 0.985Lynx rufus prion protein (PRNP) gene, complete cds.
91121111282282 1.000Lynx canadensis isolate Vic control region, partial sequence; mitochondrial.
9286111678678 1.000Lynx canadensis breast and ovarian cancer susceptibility protein 1 (BRCA1) gene, exon 9 and partial cds.
9396111344344 1.000Lynx canadensis cAMP responsive element modulator (CREM) gene, 3' UTR.
94143111471471 1.000Lynx canadensis feline leukemia virus subgroup C cellular receptor 1 (FLVCR1) gene, intron 7 and partial cds.
9598111317317 1.000Lynx canadensis phospholipase C beta 4 (PLCB4) gene, 3' UTR.
96102111964964 1.000Lynx canadensis 12S ribosomal RNA gene, partial sequence; mitochondrial.
97144111588588 1.000Lynx canadensis peroxisome proliferator-activated receptor gamma coactivator 1 alpha (PPARGC1A) gene, promoter region and partial cds.
9810711123102310 1.000Lynx canadensis transferrin receptor protein 1 (TFRC) mRNA, complete cds.
993111188188 1.000Lynx rufus SINE element in Smcy gene, complete sequence.
10016111431431 1.000Lynx rufus thyroxine-binding globulin (TBG) gene, partial sequence.
101145111702702 1.000Lynx rufus clone bcd1t microsatellite sequence.
102146111489489 1.000Lynx rufus clone bce5t microsatellite sequence.
103147111413413 1.000Lynx rufus clone bcg3d microsatellite sequence.
104148111495495 1.000Lynx rufus clone bcd8t microsatellite sequences.
105149111425425 1.000Lynx rufus clone bcg8t microsatellite sequence.
106150111796796 1.000Lynx rufus clone bch6t microsatellite sequence.
107151111659659 1.000Lynx rufus clone bcb12d microsatellite sequence.
108152111629629 1.000Lynx rufus clone bc1at microsatellite sequence.
109153111484484 1.000Lynx rufus clone bch8t microsatellite sequence.
110154111609609 1.000Lynx rufus clone bch7t microsatellite sequence.
111155111437437 1.000Lynx rufus clone bcg11d microsatellite sequence.
112156111698698 1.000Lynx rufus clone bcg7t microsatellite sequence.
113157111306306 1.000Lynx rufus clone bcg4t microsatellite sequences.
114158111225225 1.000Lynx rufus clone bcf9d microsatellite sequences.
115159111975975 1.000Lynx rufus clone bcf8t microsatellite sequences.
116160111566566 1.000Lynx rufus clone bcf6t microsatellite sequences.
117161111406406 1.000Lynx rufus clone bcf2d microsatellite sequence.
118162111438438 1.000Lynx rufus clone bce9d microsatellite sequence.
119163121545554 0.992Lynx rufus clone bce3d microsatellite sequence.
120164111256256 1.000Lynx rufus clone bce1d microsatellite sequences.
121165111359359 1.000Lynx rufus clone bcd9d microsatellite sequence.
122166121411505 0.907Lynx rufus clone bcc7t microsatellite sequences.
123167111705705 1.000Lynx rufus clone bcd5t microsatellite sequence.
124168111567567 1.000Lynx rufus clone bcd4t microsatellite sequence.
125169111391391 1.000Lynx rufus clone bcd1d microsatellite sequences.
126170111410410 1.000Lynx rufus clone bcc10d microsatellite sequences.
127171111428428 1.000Lynx rufus clone bcc4t microsatellite sequence.
128172111706706 1.000Lynx rufus clone bcb10d microsatellite sequence.
129173111430430 1.000Lynx rufus clone bcb9d microsatellite sequence.
130174111420420 1.000Lynx rufus clone bca12d microsatellite sequence.
131175111441441 1.000Lynx rufus clone bc8bd microsatellite sequence.
132176111389389 1.000Lynx rufus clone bc8a microsatellite sequence.
133177111440440 1.000Lynx rufus clone bc2at microsatellite sequence.
134178111738738 1.000Lynx rufus thiopurine S-methyltransferase mRNA, complete cds.
1351791381463464 0.998Lynx rufus isolate WY132 control region, partial sequence; mitochondrial.
13611111474474 1.000Lynx rufus cytochome b gene, partial cds; mitochondrial.
13711613115031503 1.000Lynx rufus isolate LRU_64 cytochrome P450 2D6 (CYP2D6) mRNA, complete cds.
1381801217676 1.000Lynx rufus isolate PCcop3.07 16S ribosomal RNA gene, partial sequence; mitochondrial.
139188111732732 1.000Lynx pardinus relaxin mRNA, complete cds.
14018912113851562 0.943Lynx pardinus cytochrome P450 family 19 subfamily A polypeptide 1 transcript variant 1 (CYP19A1) mRNA, complete cds.
14118311114731473 1.000Lynx pardinus thiamine transport protein 1 (SLC19A2) mRNA, complete cds.
1421901119191 1.000Lynx pardinus isolate F2 control region, partial sequence; mitochondrial.
1431911119292 1.000Lynx pardinus isolate F1 control region, partial sequence; mitochondrial.
14419211112261226 1.000Lynx pardinus 3 beta-hydroxysteroid dehydrogenase (HSD3B1) mRNA, complete cds.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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