Cluster set at subtree whose root is Fungi incertae sedis (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
1-88716651992 0.904Umbelopsis ramanniana EF2 gene for translation elongation factor 2, partial cds, strain: NRRL 5844.
6-4179031013403415 0.433Zygomycete sp. AM-2008a isolate AF016 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
8-127358593451309 0.653Absidia glauca actin (ACT2) mRNA, complete cds.
9-7193300851516510 0.108Mucor racemosus 18S rRNA gene, 5.8S rRNA gene, 28S rRNA gene, internal transcribed spacer 1 (ITS1) and internal transcribed spacer 2 (ITS2), strain ATCC1216B.
10-6241400675 0.917Absidia glauca partial 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and partial 28S rRNA gene gene, strain MT 4.
12-441515576 0.944Mortierella alpina isolate 16/1.6.1 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
20-53752399773 0.755Umbelopsis sp. Mykopat 134 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
35-4174325531942 0.694Pilaira anomala strain FSU268 clone 4 beta-tubulin (btub) gene, partial cds.
40-152317652252263 0.436Mucor racemosus TEF-2 gene for elongation factor 1-alpha (EF-1-alpha).
41-17255399399 1.000Mucor hiemalis (IFM 41560) mitochondrial gene for cytochrome b, partial cds.
42-11371496929 0.731Cunninghamella bertholletiae strain UFGD_NBt07 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
57-6181641934 0.919Cunninghamella septata strain Cu-230 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence.
65-4352357533 0.680Choanephora infundibulifera f. cucurbitarum mitochondrial gene for small subunit rRNA, partial sequence.
106-664175177 0.994Lichtheimia corymbifera 18S ribosomal RNA gene, partial sequence.
107-15753574646 0.894UNVERIFIED: Syncephalastrum racemosum isolate s51-3 mcm7 gene, partial sequence.
108-151022567959 0.679Mucor circinelloides f. lusitanicus strain CBS 969.68 RNA polymerase II largest subunit (RPB1) gene, partial sequence.
109-12701497497 1.000Mucor circinelloides f. circinelloides strain LMSA 1.09.189 tsr1-like gene, partial sequence.
127-9165433548 0.819Ambomucor seriatoinflatus translation elongation factor 1 alpha (EF-1alpha) gene, partial cds.
137-15255546698 0.806Rhizomucor pusillus partial high affinity iron permease gene, exons 1-3, strain WRLCN(M) 231.
139-4529321058 0.910Mucor circinelloides f. lusitanicus delta-6-desaturase, precursor RNA, partial cds.
140-44323172796 0.915Mucor circinelloides f. lusitanicus RPB2 (RPB2) gene, partial cds.
143-45315691572 1.000Mucor sp. EIM-10 delta-6 fatty acid desaturase mRNA, complete cds.
150-7979992160 0.602Mucor circinelloides partial tubA gene for alpha-tubulin.
167-682550550 1.000Umbelopsis ramanniana isolate R67 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
202-1120833551050 0.746Absidia corymbifera genes for 18S rRNA, ITS1, 5.8S rRNA,ITS2, 28S rRNA.
207-51062338866 0.802Absidia corymbifera clone bandF11 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
218-9165604793 0.838Coemansia aciculifera gene for 28S rRNA, partial sequence, strain: KYK00188.
301-6131318567 0.797Rhizopus microsporus var. chinensis strain CBS 631.82 28S-18S ribosomal RNA intergenic spacer and 18S ribosomal RNA gene, partial sequence.
302-51418103174 0.414Rhizopus oryzae lipase precursor gene, complete cds.
303-6121864875 0.990Rhizopus microsporus var. microsporus isolate 39Rmm intergenic spacer and small subunit ribosomal RNA gene, partial sequence.
315-23516408531 0.918Rhizopus schipperae strain ATCC 96514 orotidine-5'-phosphate decarboxylase (pyrG) gene, partial cds.
329-410211761690 0.891Rhizopus stolonifer delta-6-fatty acid desaturase gene, complete cds.
430-6261657826 0.892Apophysomyces trapeziformis 18S rRNA gene (partial), ITS1, 5.8S rRNA gene, ITS2 and 28S rRNA gene (partial), strain UTHSC 08-1425.
431-4161345382 0.980Apophysomyces ossiformis partial mRNA for histone H3 (h3 gene), strain UTHSC 04-838.
432-72015811028 0.663Gongronella butleri strain UFGD_NBt09 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
444-4321496645 0.920Syncephalastrum racemosum strain HS-A2 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
469-4181395800 0.878Saksenaea vasiformis genomic DNA containing 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene, strain FMR 10131.
482-8203370371 0.998Pilaira anomala strain ATCC 36774 large subunit ribosomal RNA gene, partial sequence; mitochondrial.
487-5671613709 0.975Pilobolus kleinii strain IUE 211 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
496-9111184205 0.924Umbelopsis angularis 18S rRNA gene (partial), ITS1 and 5.8S rRNA gene (partial), strain CBS 914.85.
504-5181180188 0.977Umbelopsis isabellina genes for 18S rRNA, ITS1, 5.8S rRNA, strain: P11087.
506-452498552 0.954Mortierella sp. olrim338 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
537-6628761008 0.955Coemansia mojavensis RPB1 gene for DNA-dependent RNA polymerase II largest subunit, partial cds.
546-4447351162 0.908Dissophora decumbens strain FSU801 clone 3 beta-tubulin (btub1) gene, partial cds.
565-67511621374 0.908Capniomyces stellatus beta-tubulin (btub) gene, partial cds.
581-511112371265 0.995Smittium mucronatum strain ALG-7-W6 RPB1 (RPB1) gene, partial cds.
582-5121820820 1.000Smittium culicis strain GSMNP-1 DNA replication licensing factor (MCM7) gene, partial cds.
584-8201583766 0.933Ramicandelaber brevisporus strain TYSR02 28S ribosomal RNA gene, partial sequence.
585-4161791840 0.982Ramicandelaber sp. HMH-2010b strain FSS0901 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
602-561763827 0.936Orphella catalaunica 28S ribosomal RNA gene, partial sequence.
651-142289231881 0.696Umbelopsis ramanniana isolate AFTOL-ID 144 RNA polymerase II largest subunit (RPB1) gene, partial cds.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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