|| Cluster set at node Oryza sativa Indica Group x Oryza sativa Japonica Group (and only this node) (rel. 194)
| ||Click to see complete taxon coverage matrix or taxon coverage by genus (very large matrices may load slowly!).|
|Cluster ID||Parent cluster||TaxIDs||GIs||Genera||Lmin||Lmax||MAD1||Defline of longest sequence||Tree2|
|0||0||1||2||1||5523||5523|| 1.000||Oryza sativa Indica Group x Oryza sativa Japonica Group partial pita gene for NBS-LRR, exons 1-3, cultivar HLR-142.|
|1||1||1||17||1||2920||2994|| 0.992||Oryza sativa Indica Group x Oryza sativa Japonica Group partial piz(t) gene for NBS-LRR, exons 1-3, cultivar Fukunishiki.|
Maximum Alignment Density
Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.
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