Cluster set at subtree whose root is Placozoa (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
0-111955955 1.000Trichoplax adhaerens PaxB mRNA, partial cds.
1-111954954 1.000Trichoplax adhaerens ANTP homeobox protein (Dlx) mRNA, complete cds.
2-111457457 1.000Trichoplax adhaerens ANTP homeobox protein (Hmx) mRNA, partial cds.
3-111762762 1.000Trichoplax adhaerens ANTP homeobox protein (Mnx) mRNA, partial cds.
4-111799799 1.000Trichoplax adhaerens ribosomal protein S5 (rps5) gene, partial cds.
5-22110551055 1.000Placozoa sp. DMJ-2008 dicer-like protein A mRNA, partial cds.
6-22110741074 1.000Placozoa sp. DMJ-2008 dicer-like protein B mRNA, partial cds.
7-22110601077 0.992Trichoplax adhaerens dicer-like protein C mRNA, partial cds.
8-22110561056 1.000Placozoa sp. DMJ-2008 dicer-like protein D mRNA, partial cds.
9-22110781078 1.000Placozoa sp. DMJ-2008 dicer-like protein E mRNA, partial cds.
10-111180180 1.000Trichoplax adhaerens Dbx/Hlx mRNA, partial cds.
11-111180180 1.000Trichoplax adhaerens NK2a mRNA, partial cds.
12-111180180 1.000Trichoplax adhaerens NK2b mRNA, partial cds.
13-111180180 1.000Trichoplax adhaerens NK2c mRNA, partial cds.
14-111180180 1.000Trichoplax adhaerens NK-like protein 1 mRNA, partial cds.
15-111180180 1.000Trichoplax adhaerens Mnx mRNA, partial cds.
16-111180180 1.000Trichoplax adhaerens NK-like protein 2 mRNA, partial cds.
17-111180180 1.000Trichoplax adhaerens NK6 mRNA, partial cds.
18-111180180 1.000Trichoplax adhaerens Hox/ext.Hox-like protein mRNA, partial cds.
19-111180180 1.000Trichoplax adhaerens NK5/Hmx mRNA, partial cds.
20-111180180 1.000Trichoplax adhaerens Hex mRNA, partial cds.
21-111180180 1.000Trichoplax adhaerens Not mRNA, partial cds.
22-111180180 1.000Trichoplax adhaerens Dlx mRNA, partial cds.
23-111180180 1.000Trichoplax adhaerens Trox-2/Gsx mRNA, partial cds.
24-111180180 1.000Trichoplax adhaerens Gsc mRNA, partial cds.
25-111180180 1.000Trichoplax adhaerens Arx1 mRNA, partial cds.
26-111180180 1.000Trichoplax adhaerens Arx2 mRNA, partial cds.
27-111180180 1.000Trichoplax adhaerens Prd/Pax-like protein mRNA, partial cds.
28-111180180 1.000Trichoplax adhaerens PaxB mRNA, partial cds.
29-111180180 1.000Trichoplax adhaerens Pitx mRNA, partial cds.
30-111180180 1.000Trichoplax adhaerens Pax3-like protein mRNA, partial cds.
31-111180180 1.000Trichoplax adhaerens Otp mRNA, partial cds.
32-111180180 1.000Trichoplax adhaerens Ebx/Arx-like protein mRNA, partial cds.
33-111180180 1.000Trichoplax adhaerens Lim1 mRNA, partial cds.
34-111180180 1.000Trichoplax adhaerens Lim3/4 mRNA, partial cds.
35-111180180 1.000Trichoplax adhaerens Lim2/9 mRNA, partial cds.
36-111180180 1.000Trichoplax adhaerens Lim1/5 mRNA, partial cds.
37-111180180 1.000Trichoplax adhaerens Lim/Isl mRNA, partial cds.
38-111180180 1.000Trichoplax adhaerens Six3/6 mRNA, partial cds.
39-111180180 1.000Trichoplax adhaerens Six1/2 mRNA, partial cds.
40-111138138 1.000Trichoplax adhaerens POU4 mRNA, partial cds.
41-111180180 1.000Trichoplax adhaerens POU3 mRNA, partial cds.
42-111189189 1.000Trichoplax adhaerens PBX/PBC mRNA, partial cds.
43-111189189 1.000Trichoplax adhaerens Pknox mRNA, partial cds.
44-111189189 1.000Trichoplax adhaerens Irx mRNA, partial cds.
45-111189189 1.000Trichoplax adhaerens Meis mRNA, partial cds.
46-111243243 1.000Trichoplax adhaerens Hnf1 mRNA, partial cds.
47-221252408 0.809Placozoa sp. H2 cell division control protein 42 mRNA, partial cds.
48-11115481548 1.000Trichoplax adhaerens heat shock 70kDa protein 8 mRNA, partial cds.
49-11110141014 1.000Trichoplax adhaerens heat shock 70kDa protein 9 mRNA, partial cds.
50-221561576 0.987Placozoa sp. H2 Na+/K+-ATPase alpha-subunit mRNA, partial cds.
51-111384384 1.000Trichoplax adhaerens GTP-binding nuclear protein RAN mRNA, partial cds.
52-221258300 0.930Placozoa sp. H2 ribosomal protein S2 mRNA, partial cds.
53-111576576 1.000Trichoplax adhaerens DNA-directed RNA polymerase III polypeptide B mRNA, partial cds.
54-221303372 0.907Placozoa sp. H2 eukaryotic translation initiation factor 2 gamma mRNA, partial cds.
55-111762762 1.000Trichoplax adhaerens prolylcarboxypeptidase mRNA, partial cds.
56-11118741874 1.000Trichoplax adhaerens RNA polymerase II largest subunit mRNA, partial cds.
57-2217591344 0.782Trichoplax adhaerens beta-tubulin mRNA, complete cds.
58-781571241933 0.470Trichoplax adhaerens 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product.
59-11161176117 1.000Trichoplax adhaerens voltage-gated sodium channel Nav2.1 mRNA, complete cds.
60-111903903 1.000Trichoplax adhaerens HIF prolyl hydroxylase (PHD) mRNA, complete cds.
61-11116471647 1.000Trichoplax adhaerens hypoxia inducible factor, alpha subunit (HIF-alpha) mRNA, complete cds.
62-77112021787 0.944Trichoplax sp. 18S rRNA gene.
63-9481662913 0.774Trichoplax adhaerens 18S ribosomal RNA gene, partial sequence, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, complete sequence, and 28S ribosomal RNA gene, partial sequence.
64-111370370 1.000T. adhaerens 5' end of 28S ribosomal RNA.
65-111116116 1.000T.adhaerens 5S rRNA.
66-1319631272 0.869Trichoplax adhaerens Trox-2 homeobox transcription factor mRNA, complete cds.
67-11117841784 1.000Trichoplax adhaerens mRNA for Brachyury protein.
68-11124402440 1.000Trichoplax adhaerens mRNA for Tbx2/3 protein.
69-111737737 1.000Trichoplax adhaerens mRNA for Secp1 protein precursor.
70-11113521352 1.000Trichoplax adhaerens mRNA for actin (actin gene).
71-11116321632 1.000Trichoplax adhaerens mRNA for elongation factor 1 alpha (ef1a gene).
72-111813813 1.000Trichoplax adhaerens mRNA for metallothionein (mt gene).
73-111466466 1.000Trichoplax adhaerens mRNA for mitochondrial ribosomal protein S25 (mrps25 gene).
74-111181181 1.000Trichoplax adhaerens putative beta-actin gene, partial cds.
75-67129463198 0.983Trichoplax sp. H7 28S ribosomal RNA gene, partial sequence.
76-11117541754 1.000Trichoplax adhaerens Not homeobox transcription factor mRNA, complete cds.
77-111442442 1.000Trichoplax sp. H3 18S ribosomal RNA gene, partial sequence.
78-661956956 1.000Trichoplax sp. BZF1 PTTG1IP gene, complete cds.
79-661641641 1.000Trichoplax sp. BZF1 signal peptidase gene, partial cds.
80-661808808 1.000Trichoplax sp. BZF1 signal peptidase gene, partial cds.
81-910120422042 1.000Trichoplax sp. BZC6 unknown gene.
82-441573573 1.000Trichoplax sp. BZ264 clathrin light chain (CLTA) gene, partial cds.
83-441233233 1.000Trichoplax sp. BZ264 clathrin light chain (CLTA) gene, partial sequence.
84-441798798 1.000Trichoplax sp. BZ264 clathrin light chain (CLTA) gene, partial cds.
85-68114451454 0.998Trichoplax sp. BZ413 phospholipase A21 precursor, gene, partial cds.
86-551484780 0.891Trichoplax sp. BZ413 glutathione S-transferase (GST) gene, partial sequence.
87-551813813 1.000Trichoplax sp. BZ413 glutathione S-transferase (GST) gene, complete cds.
88-881477477 1.000Trichoplax sp. BZ413 unknown gene, partial cds.
89-881651651 1.000Trichoplax sp. BZ413 unknown gene, partial cds.
90-881354354 1.000Trichoplax sp. BZ413 unknown gene, partial sequence.
91-4949114150 0.791Placozoan sp. BZ227 16S ribosomal RNA gene, partial sequence; mitochondrial.
92-559090 1.000Placozoan sp. BZD10 16S ribosomal RNA gene, partial sequence; mitochondrial.
93-1111119119 1.000Placozoan sp. JM511 16S ribosomal RNA gene, partial sequence; mitochondrial.
94-11781781 1.000Placozoa sp. H2 heat shock 70kDa protein 8 mRNA, partial cds.
95-11519519 1.000Placozoa sp. H2 clone CAR-PAN-4 sperm associated antigen 8 (Spag8) mRNA, partial cds.
96-11888888 1.000Placozoa sp. H2 clone CAR-PAN-4 spermatoproteinsis apopotis related protein (DnaJB13) mRNA, partial cds.
97-11810810 1.000Placozoa sp. H2 clone CAR-PAN-4 meiosis-specific nuclear structure protein 1 (Mns1) mRNA, partial cds.
98-11240240 1.000Placozoa sp. H2 clone CAR-PAN-4 meiosis expressed protein 1 (Meig1) mRNA, partial cds.
99-11735735 1.000Placozoa sp. H4 clone HWH-B sperm associated antigen 8 (Spag8) mRNA, complete cds.
100-11601601 1.000Placozoa sp. H4 clone HWH-B spermatoproteinsis apopotis related protein (DnaJB13) mRNA, partial cds.
101-11200200 1.000Placozoa sp. H4 clone HWH-B meiosis-specific nuclear structure protein 1 mRNA, partial cds.
102-11710710 1.000Placozoa sp. H4 clone HWH-B meiosis expressed protein 1 (Meig1) mRNA, complete cds.
103-11660660 1.000Placozoa sp. H4 clone HWH-B non-metastatic cell 5 (Nme5) mRNA, partial cds.
104-1122852285 1.000Placozoa sp. H4 forkhead box protein J1 (foxJ1) mRNA, complete cds.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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