Cluster set at subtree whose root is Mesozoa (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
0-11117001700 1.000Dicyema misakiense mitochondrial COXI gene for cytochrome c oxidase subunit I, complete sequence.
1-11115991599 1.000Dicyema misakiense mitochondrial COXII gene for cytochrome c oxidase subunit II, complete sequence.
2-11116971697 1.000Dicyema misakiense mitochondrial COXIII gene for cytochrome c oxidase subunit III, complete sequence.
3-11112461246 1.000Dicyema misakiense mitochondrial DNA for large subunit ribosomal RNA, partial sequence.
4-111852852 1.000Dicyema misakiense mitochondrial gene for NADH dehydrogenase subunit I, complete cds.
5-111778778 1.000Dicyema misakiense mitochondrial gene for NADH dehydrogenase subunit II, complete cds.
6-111116116 1.000Dicyema misakiense (Mesozoa) 5S rRNA.
7-12118531861 0.998R.ophiocomae 18S rRNA gene.
8-33115131663 0.952Dicyema sp. 18S rRNA gene.
9-11116251625 1.000Dicyema acuticephalum gene for 18S ribosomal RNA, partial sequence.
10-1219991040 0.980Dicyema acuticephalum gene for actin, complete cds.
11-12110861220 0.945Dicyema acuticephalum gene for fructose-bisphosphate aldolase, complete cds.
12-12112451245 1.000Dicyema acuticephalum gene for ATP synthase beta subunit, complete cds.
13-12112271406 0.936Dicyema acuticephalum gene for Pax6, complete cds.
14-14110231051 0.986Dicyema acuticephalum gene for Zic family member ZicA, complete cds.
15-23111311270 0.927Dicyema japonicum gene for actin, complete cds.
16-11115041504 1.000Dicyema orientale mRNA for DoxC, complete cds.
17-11113341334 1.000Dicyema orientale otx mRNA for orthodenticle, partial cds.
18-111504504 1.000Dicyema orientale mRNA for T-box protein, partial cds.
19-111390390 1.000Dicyema sp. Ov-NT1 DNA, clone: Dc-03.
20-111314314 1.000Dicyema sp. Ov-NT1 DNA, clone: Dc-1/05.
21-111364364 1.000Dicyema sp. Ov-NT1 DNA, clone: Dc-2/05.
22-111390390 1.000Dicyema sp. Ov-NT1 DNA, clone: Dc-10.
23-111503503 1.000Dicyema sp. Ov-NT1 DNA, clone: Dc-11.
24-111389389 1.000Dicyema sp. Ov-NT1 DNA, clone: Dc-08.
25-191168175 0.992Dicyema sp. Ov-NT1 DNA, repeat sequence RS/HDIII-6.
26-46212171530 0.876Dicyema japonicum gene for beta-tubulin, complete cds.
27-12113961441 0.984Dicyema japonicum mRNA for alpha-tubulin, complete cds.
28-12112861324 0.986Dicyema japonicum gene for tektin B, exon 1-5, complete cds.
29-12113441423 0.972Dicyema japonicum gene for tektin C, exon 1-7, complete cds.
30-12112701476 0.930Dicyema japonicum clp1 gene for chitinase like protein1, complete cds.
31-121809863 0.969Dicyema japonicum gene for 14-3-3 protein, complete cds.
32-1219301061 0.938Dicyema japonicum Capzb gene for F-actin capping protein beta, complete cds.
33-121876893 0.990Dicyema japonicum AQP mRNA for aquaglyceroporin, complete cds.
34-12112961443 0.949Dicyema japonicum gene for aspartate aminotransferase, complete cds.
35-11111021102 1.000Dicyema japonicum gene for NAD kinase, partial cds.
36-11112571257 1.000Dicyema japonicum gene for branched chain ketoacid dehydrogenase, complete cds.
37-11117051705 1.000Dicyema japonicum gene for bromodomain containing protein, complete cds.
38-11111741174 1.000Dicyema japonicum gene for calcium binding protein, complete cds.
39-11111751175 1.000Dicyema japonicum gene for cyclin dependent kinase, complete cds.
40-111983983 1.000Dicyema japonicum gene for hypothetical protein, complete cds.
41-11115761576 1.000Dicyema japonicum gene for DEAD box ATP-dependent RNA helicase, complete cds.
42-11116081608 1.000Dicyema japonicum ef1a gene for elongation factor 1-alpha, complete cds.
43-11115331533 1.000Dicyema japonicum gene for FERM domain containing protein, complete cds.
44-11112601260 1.000Dicyema japonicum gale gene for UDP-glucose 4-epimerase, complete cds.
45-12110161093 0.965Dicyema japonicum gene for glucose transporter, partial cds.
46-11113961396 1.000Dicyema japonicum GAPDH gene for glyceraldehyde-3-phosphate dehydrogenase, complete cds.
47-12110651206 0.942Dicyema japonicum gene for sodium- and chloride-dependent glycine transporter, partial cds.
48-11119501950 1.000Dicyema japonicum Hsp60 gene for 60 kDa heat shock protein, complete cds.
49-12111331327 0.927Dicyema japonicum idh3a gene for isocitrate dehydrogenase [NAD] subunit alpha, complete cds.
50-11111781178 1.000Dicyema japonicum mdh gene for malate dehydrogenase, complete cds.
51-11110411041 1.000Dicyema japonicum np gene for nucleoside phosphorylase, complete cds.
52-111902902 1.000Dicyema japonicum psmc3 gene for 26S proteasome subunit ATPase 3, partial cds.
53-11111951195 1.000Dicyema japonicum qk gene for quaking protein, complete cds.
54-111927927 1.000Dicyema japonicum rpa2 gene for replication protein A 32 kDa subunit, complete cds.
55-11111921192 1.000Dicyema japonicum rrm2 gene for ribonucleoside-diphosphate reductase subunit M2, complete cds.
56-11111811181 1.000Dicyema japonicum rpl4 gene for ribosomal protein L4, complete cds.
57-111981981 1.000Dicyema japonicum rpl8 gene for 60S ribosomal protein L8, complete cds.
58-11110711071 1.000Dicyema japonicum gene for hypothetical protein, complete cds.
59-1219941112 0.947Dicyema japonicum shmt gene for serine hydroxymethyltransferase, partial cds.
60-11110981098 1.000Dicyema japonicum slc35b1 gene for solute carrier family 35 member B1, complete cds.
61-11113151315 1.000Dicyema japonicum gene for hypothetical protein, complete cds.
62-12111061228 0.950Dicyema japonicum suclg1 gene for succinate-CoA ligase GDP forming alpha subunit, complete cds.
63-111874874 1.000Dicyema japonicum uck gene for uridine-cytidine kinase, complete cds.
64-12113501511 0.947Dicyema japonicum vcp gene for valosin-containing protein, partial cds.
65-11112721272 1.000Dicyema japonicum premature mRNA, similar to innexin1.
66-111821821 1.000Dicyema japonicum ETS mRNA for ETS domain containing protein, partial cds.
67-111802802 1.000Dicyema japonicum G6PD mRNA for glucose-6-phosphate 1-dehydrogenase, partial cds.
68-111764764 1.000Dicyema japonicum HSP70 mRNA for heat shock protein 70, partial cds.
69-111724724 1.000Dicyema japonicum HSP90 mRNA for heat shock protein 90, partial cds.
70-11111231123 1.000Dicyema japonicum rad18 like mRNA for postreplication repair E3 ubiquitin-protein ligase RAD18 like protein, complete cds.
71-111625625 1.000Dicyema japonicum CATL mRNA for cathepsin L, partial cds.
72-11112631263 1.000Dicyema koshidai inx1 mRNA for innexin1, complete cds.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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