Cluster set at subtree whose root is Ctenophora (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
0-12225219342 0.815Cydippida sp. KUR30 genes for 18S rRNA, internal transcribed spacer 1 and 5.8S rRNA, partial and complete sequence, isolate: KUR30.
1-332371373 0.996B. mitrata 5' end of 28S ribosomal RNA.
2-3342176522556 0.783Vallicula multiformis 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
3-11129182918 1.000Pleurobrachia bachei glutamate receptor kainate-like protein mRNA, complete cds.
4-11112501250 1.000Pleurobrachia bachei P2X receptor mRNA, complete cds.
5-1119999 1.000P.bachei (Ctenophore) Ct-ets-1 gene.
6-33331013524 0.921Beroe ovata 28S large subunit ribosomal RNA gene, partial sequence.
7-111181181 1.000Pleurobrachia bachei putative beta-actin gene, partial cds.
8-111966966 1.000Pleurobrachia pileus protein kinase Mos (Mos) mRNA, complete cds.
9-11115331533 1.000Pleurobrachia pileus cytochrome c oxidase subunit 1 (cox1) gene, complete cds; mitochondrial.
10-11116891689 1.000Pleurobrachia pileus mRNA for Brachyury protein.
11-22212451512 0.912Pleurobrachia pileus mRNA for elongation factor 1 alpha (ef1a gene).
12-11113551355 1.000Pleurobrachia pileus mRNA for Tlx-like protein.
13-11125232523 1.000Pleurobrachia pileus mRNA for Tbx2/3 protein.
14-111177177 1.000Pleurobrachia pileus SOX1 (SOX1) mRNA, partial cds.
15-131177177 1.000Pleurobrachia pileus SOX12 (SOX12) mRNA, partial cds.
16-111177177 1.000Pleurobrachia pileus SOX3 (SOX3) mRNA, partial cds.
17-111177177 1.000Pleurobrachia pileus SOX4 (SOX4) mRNA, partial cds.
18-121177177 1.000Pleurobrachia pileus SOX11 (SOX11) mRNA, partial cds.
19-111177177 1.000Pleurobrachia pileus SOX6 (SOX6) mRNA, partial cds.
20-111177177 1.000Pleurobrachia pileus SOX7 (SOX7) mRNA, partial cds.
21-111177177 1.000Pleurobrachia pileus SOX8 (SOX8) mRNA, partial cds.
22-111177177 1.000Pleurobrachia pileus SOX9 (SOX9) mRNA, partial cds.
23-111177177 1.000Pleurobrachia pileus SOX10 (SOX10) mRNA, partial cds.
24-111789789 1.000Haeckelia beehleri GFP-type green fluorescent protein mRNA, complete cds.
25-111795795 1.000Haeckelia beehleri non-fluorescent GFP-type green fluorescent protein mRNA, complete cds.
26-111294294 1.000Mertensia ovum 18S ribosomal RNA gene and internal transcribed spacer 1, partial sequence.
27-11118431843 1.000Coeloplana willeyi mRNA for Pax-A, complete cds.
28-11119411941 1.000Coeloplana willeyi mRNA for Pax-B, complete cds.
29-11113071307 1.000Coeloplana willeyi mRNA for Six-A, complete cds.
30-11116091609 1.000Coeloplana willeyi mRNA for Six-B1, partial cds.
31-11113911391 1.000Coeloplana willeyi mRNA for Six-C, complete cds.
32-111976976 1.000Pleurobrachia globosa voucher IOCAS:36009 cytochrome oxidase subunit I (COX1) gene, partial cds; mitochondrial.
33-33435541039 0.597Bolinopsis sp. 18S ribosomal RNA gene, partial sequence, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, complete sequence, and 28S ribosomal RNA gene, partial sequence.
34-221271271 1.000Coeloplana sp. SHL-2011 internal transcribed spacer 1, partial sequence.
35-221664664 1.000Coeloplana sp. SHL-2011 cytochrome oxidase subunit I (cox1) gene, partial cds; mitochondrial.
36-221795841 0.973Euplokamis sp. SM-2011c genomic DNA containing partial 18S rRNA gene and ITS1.
37-333374374 1.000Bolinopsis infundibulum ribosomal protein S5 (rps5) gene, partial cds.
38-2317896 0.885Beroe sp. SL-2003 paired-type homeodomain-containing protein gene, partial cds.
39-1218181 1.000Beroe ovata homeobox protein BHox 11 gene, partial cds.
40-1118181 1.000Beroe ovata homeobox protein BHox 6 gene, partial cds.
41-1118181 1.000Beroe ovata homeobox protein BHox 17 gene, partial cds.
42-1118181 1.000Beroe ovata homeobox protein BHox 50 gene, partial cds.
43-1118181 1.000Beroe ovata homeobox protein BHox 29 gene, partial cds.
44-1218181 1.000Beroe ovata homeobox protein BHox 38 gene, partial cds.
45-1116969 1.000Beroe ovata homeobox protein BHox 31 gene, partial cds.
46-1118181 1.000Beroe ovata homeobox protein BHox 38L gene, partial cds.
47-1118181 1.000Beroe ovata homeobox protein BHox 34 gene, partial cds.
48-1118181 1.000Beroe ovata homeobox protein BHox 19 gene, partial cds.
49-1118181 1.000Beroe ovata homeobox protein BHox 24 gene, partial cds.
50-1118181 1.000Beroe ovata homeobox protein BHox 43 gene, partial cds.
51-1117878 1.000Beroe ovata potassium channel gene, partial cds.
52-1118181 1.000Beroe ovata homeobox protein BHox26 gene, partial cds.
53-1118181 1.000Beroe ovata homeobox protein BHox18 gene, partial cds.
54-1118181 1.000Beroe ovata homeobox protein BHox35 gene, partial cds.
55-11129022902 1.000Beroe ovata heat-shock protein Hsp70 gene, partial cds.
56-111524524 1.000Beroe ovata cytochrome c oxidase subunit II (COII) gene, partial cds; mitochondrial gene for mitochondrial product.
57-111592592 1.000Mnemiopsis sp. RFW-2001 large subunit ribosomal RNA (rrnL) gene, partial sequence; mitochondrial gene for mitochondrial product.
58-1219696 1.000Beroe sp. SL-2003 hex-like homeodomain-containing protein gene, partial cds.
59-21326211160 0.679Beroe abyssicola apoberovin 4 (BA4) mRNA, complete cds.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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