Pleurodira (rel. 194): Cluster 84 (up to parent cluster)

Number of sequences (GIs)23
Number of distinct taxon IDs (TIs)15
Shortest sequence593 nt -- Pelusios sinuatus partial rag1 gene for recombination activating protein 1, specimen voucher MTD:T:5506.
Longest sequence2793 nt -- Podocnemis expansa recombination activating gene 1 (RAG-1) gene, partial cds.
Maximum alignment density1 0.605
Cluster statusCluster has 5 child clusters
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  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  

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NCBI taxon name GI TI Length Defline
Chelodina longicollis 56682710 44491 2790 Chelodina longicollis recombination activating gene 1 (RAG-1) gene, partial cds.
Chelus fimbriata 56682704 44495 2790 Chelus fimbriatus recombination activating gene 1 (RAG-1) gene, partial cds.
Erymnochelys madagascariensis 375280227 44520 1375 Erymnochelys madagascariensis voucher MTD_T_4232 recombination activating protein 1 (Rag1) gene, partial cds.
Erymnochelys madagascariensis 66276619 44520 862 Erymnochelys madagascariensis recombination activating protein 1 (RAG1) gene, partial cds.
Hydromedusa tectifera 66276629 61327 728 Hydromedusa tectifera recombination activating protein 1 (RAG1) gene, partial cds.
Mesoclemmys gibba 56682706 1234954 2790 Phrynops gibbus recombination activating gene 1 (RAG-1) gene, partial cds.
Myuchelys latisternum 56682708 1041116 2790 Elseya latisternum recombination activating gene 1 (RAG-1) gene, partial cds.
Pelomedusa subrufa 56682712 44522 2790 Pelomedusa subrufa recombination activating gene 1 (RAG-1) gene, partial cds.
Pelomedusa subrufa 213494423 44522 2790 Pelomedusa subrufa recombination activating protein 1 (RAG-1) gene, partial cds.
Pelomedusa subrufa 375280219 44522 1444 Pelomedusa subrufa voucher FGZC324 recombination activating protein 1 (Rag1) gene, partial cds.
Pelomedusa subrufa 375280221 44522 1389 Pelomedusa subrufa voucher MTD_T 5509 recombination activating protein 1 (Rag1) gene, partial cds.
Pelomedusa subrufa 66276625 44522 862 Pelomedusa subrufa recombination activating protein 1 (RAG1) gene, partial cds.
Peltocephalus dumeriliana 66276623 329145 855 Peltocephalus dumeriliana recombination activating protein 1 (RAG1) gene, partial cds.
Pelusios castanoides 375280225 904216 1444 Pelusios castanoides voucher MTD_T 5212 recombination activating protein 1 (Rag1) gene, partial cds.
Pelusios gabonensis 66276627 329147 769 Pelusios gabonensis recombination activating protein 1 (RAG1) gene, partial cds.
Pelusios sinuatus 297372882 44526 593 Pelusios sinuatus partial rag1 gene for recombination activating protein 1, specimen voucher MTD:T:5506.
Pelusios sp. AC-2011 375280223 1127752 1444 Pelusios sp. AC-2011 voucher DRV5735 recombination activating protein 1 (Rag1) gene, partial cds.
Pelusios williamsi 56682714 55535 2790 Pelusios williamsi recombination activating gene 1 (RAG-1) gene, partial cds.
Podocnemis expansa 56682716 44507 2793 Podocnemis expansa recombination activating gene 1 (RAG-1) gene, partial cds.
Podocnemis expansa 375280229 44507 1377 Podocnemis expansa voucher MTD_T_4890 recombination activating protein 1 (Rag1) gene, partial cds.
Podocnemis expansa 66276621 44507 769 Podocnemis expansa recombination activating protein 1 (RAG1) gene, partial cds.
Podocnemis expansa 399144241 44507 1091 Podocnemis expansa recombination activating protein 1 (RAG1) gene, partial cds.
Podocnemis unifilis 336244602 227871 1512 Podocnemis unifilis recombination activating protein 1 gene, partial cds.


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