Testudines (rel. 194): Cluster 210

Number of sequences (GIs)2
Number of distinct taxon IDs (TIs)2
Shortest sequence597 nt -- Podocnemis expansa voucher TNE 1255 TNF receptor-associated factor 6 (TRAF6) gene, partial cds.
Longest sequence600 nt -- Chelydra serpentina voucher TWR 2114 TNF receptor-associated factor 6 (TRAF6) gene, partial cds.
Maximum alignment density1 0.998
Cluster statusCluster is redundant with its child cluster
View tree
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  

Download cluster...
  • Unaligned cluster in Fasta format
Download alignments...
  • Muscle alignment in Fasta format (Color view)
Download a RAxML optimal tree with branch lengths (Muscle alignment)...
Download a midpoint rooted RAxML optimal tree with branch lengths (Muscle alignment)...


NCBI taxon name GI TI Length Defline
Chelydra serpentina 392936088 8475 600 Chelydra serpentina voucher TWR 2114 TNF receptor-associated factor 6 (TRAF6) gene, partial cds.
Podocnemis expansa 392936108 44507 597 Podocnemis expansa voucher TNE 1255 TNF receptor-associated factor 6 (TRAF6) gene, partial cds.


Back to taxonomic hierarchy view
Back to Phylota Browser home