Testudines (rel. 194): Cluster 124

Number of sequences (GIs)92
Number of distinct taxon IDs (TIs)46
Shortest sequence200 nt -- Graptemys pseudogeographica kohnii glyceraldehyde-3-phosphate dehydrogenase (GAPD) gene, intron 11.
Longest sequence516 nt -- Trachemys scripta glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, intron 11 and partial cds.
Maximum alignment density1 0.828
Cluster statusCluster is redundant with its child cluster
View tree
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  

Download cluster...
  • Unaligned cluster in Fasta format
Download alignments...
  • Muscle alignment in Fasta format (Color view)
Download a RAxML optimal tree with branch lengths (Muscle alignment)...
Download a midpoint rooted RAxML optimal tree with branch lengths (Muscle alignment)...


NCBI taxon name GI TI Length Defline
Actinemys marmorata 62547704 335395 445 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547690 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547726 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547732 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547742 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547752 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547758 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547736 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547738 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547748 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547756 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 284177334 335395 408 Actinemys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPD) gene, intron 11 and partial cds.
Actinemys marmorata 62547672 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547674 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547676 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547678 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547680 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547682 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547684 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547686 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547688 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547692 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547694 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547696 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547698 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547700 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547702 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547706 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547708 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547710 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547712 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547714 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547716 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547718 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547720 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547722 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547724 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547728 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547730 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547734 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547740 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547744 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547746 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547750 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547754 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Actinemys marmorata 62547760 335395 452 Emys marmorata glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, exons 11, 12 and partial cds.
Chelonia mydas 209916627 8469 490 Chelonia mydas glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, intron 11 and partial cds.
Chelydra serpentina 209916621 8475 353 Chelydra serpentina glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, intron 11 and partial cds.
Chrysemys picta marginata 284177336 391339 303 Chrysemys picta marginata glyceraldehyde-3-phosphate dehydrogenase (GAPD) gene, intron 11 and partial cds.
Clemmys guttata 284177338 85608 408 Clemmys guttata glyceraldehyde-3-phosphate dehydrogenase (GAPD) gene, intron 11 and partial cds.
Deirochelys reticularia 284177340 158819 398 Deirochelys reticularia voucher JJW 2072 glyceraldehyde-3-phosphate dehydrogenase (GAPD) gene, intron 11 and partial cds.
Dermochelys coriacea 209916625 27794 340 Dermochelys coriacea glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, intron 11 and partial cds.
Emydoidea blandingii 284177342 85613 408 Emydoidea blandingii voucher FMNH 261563 glyceraldehyde-3-phosphate dehydrogenase (GAPD) gene, intron 11 and partial cds.
Emys orbicularis 284177344 82168 408 Emys orbicularis glyceraldehyde-3-phosphate dehydrogenase (GAPD) gene, intron 11 and partial cds.
Glyptemys insculpta 284177346 335392 408 Glyptemys insculpta glyceraldehyde-3-phosphate dehydrogenase (GAPD) gene, intron 11 and partial cds.
Glyptemys muhlenbergii 284177348 335393 407 Glyptemys muhlenbergii glyceraldehyde-3-phosphate dehydrogenase (GAPD) gene, intron 11 and partial cds.
Graptemys barbouri 284177350 33563 405 Graptemys barbouri glyceraldehyde-3-phosphate dehydrogenase (GAPD) gene, intron 11 and partial cds.
Graptemys caglei 284177352 33564 381 Graptemys caglei voucher MF 9641 glyceraldehyde-3-phosphate dehydrogenase (GAPD) gene, intron 11 and partial cds.
Graptemys flavimaculata 284177354 33566 404 Graptemys flavimaculata glyceraldehyde-3-phosphate dehydrogenase (GAPD) gene, intron 11 and partial cds.
Graptemys geographica 284177356 8481 405 Graptemys geographica voucher FMNH 261593 glyceraldehyde-3-phosphate dehydrogenase (GAPD) gene, intron 11 and partial cds.
Graptemys gibbonsi 284177358 33567 405 Graptemys gibbonsi glyceraldehyde-3-phosphate dehydrogenase (GAPD) gene, intron 11 and partial cds.
Graptemys nigrinoda 284177360 33568 404 Graptemys nigrinoda voucher CM 150955 glyceraldehyde-3-phosphate dehydrogenase (GAPD) gene, intron 11 and partial cds.
Graptemys oculifera 284177362 33569 330 Graptemys oculifera voucher MVZ 236247 glyceraldehyde-3-phosphate dehydrogenase (GAPD) gene, intron 11.
Graptemys ouachitensis sabinensis 284177363 580252 405 Graptemys ouachitensis sabinensis voucher MF 0471 glyceraldehyde-3-phosphate dehydrogenase (GAPD) gene, intron 11 and partial cds.
Graptemys pseudogeographica kohnii 284177365 580253 200 Graptemys pseudogeographica kohnii glyceraldehyde-3-phosphate dehydrogenase (GAPD) gene, intron 11.
Graptemys pulchra 284177366 33572 405 Graptemys pulchra glyceraldehyde-3-phosphate dehydrogenase (GAPD) gene, intron 11 and partial cds.
Graptemys versa 284177368 33573 379 Graptemys versa voucher MVZ 236248 glyceraldehyde-3-phosphate dehydrogenase (GAPD) gene, intron 11 and partial cds.
Macrochelys temminckii 209916623 571338 361 Macrochelys temminckii glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, intron 11 and partial cds.
Malaclemys terrapin littoralis 284177370 699585 406 Malaclemys terrapin littoralis voucher MF 2462 glyceraldehyde-3-phosphate dehydrogenase (GAPD) gene, intron 11 and partial cds.
Malaclemys terrapin terrapin 284177372 391341 406 Malaclemys terrapin terrapin glyceraldehyde-3-phosphate dehydrogenase (GAPD) gene, intron 11 and partial cds.
Mauremys mutica 410378335 74926 451 Mauremys mutica glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, intron 11 and partial cds.
Platysternon megacephalum 209916613 55544 502 Platysternon megacephalum glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, intron 11 and partial cds.
Pseudemys concinna 284177374 270252 408 Pseudemys concinna glyceraldehyde-3-phosphate dehydrogenase (GAPD) gene, intron 11 and partial cds.
Pseudemys gorzugi 284177376 667124 408 Pseudemys gorzugi voucher MF 8714 glyceraldehyde-3-phosphate dehydrogenase (GAPD) gene, intron 11 and partial cds.
Pseudemys nelsoni 284177378 301539 408 Pseudemys nelsoni voucher JJW 1057 glyceraldehyde-3-phosphate dehydrogenase (GAPD) gene, intron 11 and partial cds.
Pseudemys peninsularis 284177380 580248 408 Pseudemys peninsularis voucher JJW 1058 glyceraldehyde-3-phosphate dehydrogenase (GAPD) gene, intron 11 and partial cds.
Pseudemys rubriventris 284177382 580249 408 Pseudemys rubriventris voucher JJW 1056 glyceraldehyde-3-phosphate dehydrogenase (GAPD) gene, intron 11 and partial cds.
Pseudemys texana 284177384 365650 408 Pseudemys texana glyceraldehyde-3-phosphate dehydrogenase (GAPD) gene, intron 11 and partial cds.
Staurotypus triporcatus 209916619 55537 498 Staurotypus triporcatus glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, intron 11 and partial cds.
Sternotherus odoratus 209916617 142480 488 Sternotherus odoratus glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, intron 11 and partial cds.
Sternotherus odoratus 284177333 142480 346 Sternotherus odoratus glyceraldehyde-3-phosphate dehydrogenase (GAPD) gene, intron 11.
Terrapene carolina carolina 284177386 391345 401 Terrapene carolina carolina voucher JJW 1852 glyceraldehyde-3-phosphate dehydrogenase (GAPD) gene, intron 11 and partial cds.
Terrapene carolina triunguis 284177388 391347 408 Terrapene carolina triunguis glyceraldehyde-3-phosphate dehydrogenase (GAPD) gene, intron 11 and partial cds.
Terrapene coahuila 284177390 158815 408 Terrapene coahuila voucher AO233 glyceraldehyde-3-phosphate dehydrogenase (GAPD) gene, intron 11 and partial cds.
Terrapene nelsoni nelsoni 284177392 699598 408 Terrapene nelsoni nelsoni glyceraldehyde-3-phosphate dehydrogenase (GAPD) gene, intron 11 and partial cds.
Terrapene ornata ornata 284177394 391342 408 Terrapene ornata ornata glyceraldehyde-3-phosphate dehydrogenase (GAPD) gene, intron 11 and partial cds.
Trachemys emolli 284177400 365638 405 Trachemys scripta emolli glyceraldehyde-3-phosphate dehydrogenase (GAPD) gene, intron 11 and partial cds.
Trachemys gaigeae 284177396 365625 419 Trachemys gaigeae voucher MF 2449 glyceraldehyde-3-phosphate dehydrogenase (GAPD) gene, intron 11 and partial cds.
Trachemys nebulosa 284177402 580251 405 Trachemys scripta nebulosa voucher MVZ 137443 glyceraldehyde-3-phosphate dehydrogenase (GAPD) gene, intron 11 and partial cds.
Trachemys scripta 209916615 34903 516 Trachemys scripta glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, intron 11 and partial cds.
Trachemys scripta elegans 284177398 31138 419 Trachemys scripta elegans voucher JJW 1853 glyceraldehyde-3-phosphate dehydrogenase (GAPD) gene, intron 11 and partial cds.
Trachemys venusta 284177404 904225 405 Trachemys scripta venusta voucher MVZ 233246 glyceraldehyde-3-phosphate dehydrogenase (GAPD) gene, intron 11 and partial cds.


Back to taxonomic hierarchy view
Back to Phylota Browser home