Testudines (rel. 194): Cluster 101

Number of sequences (GIs)4
Number of distinct taxon IDs (TIs)4
Shortest sequence255 nt -- Pelusios castaneus insulin-like growth factor 1 (IGF1) mRNA, partial cds.
Longest sequence462 nt -- Pelodiscus sinensis isolate lph2411 insulin-like growth factor-1 (IGF-1) mRNA, complete cds.
Maximum alignment density1 0.665
Cluster statusCluster is redundant with its child cluster
View tree
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  

Download cluster...
  • Unaligned cluster in Fasta format
Download alignments...
  • Muscle alignment in Fasta format (Color view)
Download a RAxML optimal tree with branch lengths (Muscle alignment)...
Download a midpoint rooted RAxML optimal tree with branch lengths (Muscle alignment)...


NCBI taxon name GI TI Length Defline
Chelydra serpentina 392358100 8475 256 Chelydra serpentina insulin-like growth factor 1 (IGF1) mRNA, partial cds.
Chrysemys picta 392358102 8479 256 Chrysemys picta insulin-like growth factor 1 (IGF1) mRNA, partial cds.
Pelodiscus sinensis 356484678 13735 462 Pelodiscus sinensis isolate lph2411 insulin-like growth factor-1 (IGF-1) mRNA, complete cds.
Pelusios castaneus 392358106 367368 255 Pelusios castaneus insulin-like growth factor 1 (IGF1) mRNA, partial cds.


Back to taxonomic hierarchy view
Back to Phylota Browser home