Chytridiomycota (rel. 194): Cluster 203

Number of sequences (GIs)3
Number of distinct taxon IDs (TIs)2
Shortest sequence902 nt -- Chytriomyces poculatus isolate JEL343 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
Longest sequence934 nt -- Chytriomyces poculatus isolate JEL374 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
Maximum alignment density1 0.978
Cluster statusCluster is redundant with its child cluster
View tree
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  

Download cluster...
  • Unaligned cluster in Fasta format
Download alignments...
  • Muscle alignment in Fasta format (Color view)
Download a RAxML optimal tree with branch lengths (Muscle alignment)...
Download a midpoint rooted RAxML optimal tree with branch lengths (Muscle alignment)...


NCBI taxon name GI TI Length Defline
Lobulomyces poculatus 164421752 447950 934 Chytriomyces poculatus isolate JEL374 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
Lobulomyces poculatus 164421751 447950 902 Chytriomyces poculatus isolate JEL343 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
Lobulomyces sp. JEL178 164421753 447961 904 Chytridiales sp. JEL178 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.


Back to taxonomic hierarchy view
Back to Phylota Browser home